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BACTERIAL · YEAST

Microbial and precision fermentation

Connect strain, substrate and inoculum history with fermentation measurements and product outcomes. Compare growth, feed, oxygen demand and metabolic behavior to investigate the constraints shaping productivity.

Microbial and precision fermentation workflow from Strain & seed, Fermentation, Recovery, Product analysis connected through Bio Hub, Bio Twin, Bio Agents and Bio OS

MODALITY-SPECIFIC PROCESS INTELLIGENCE

Link microbial kinetics to feed, oxygen and scale.

  1. 01Strain & seed
  2. 02Fermentation
  3. 03Recovery
  4. 04Product analysis
SCIENTIFIC WORKFLOW

Strain and process context

Carry strain identity, inoculum history, material lots and operating conditions into run comparisons.

SCIENTIFIC WORKFLOW

Feed and metabolism

Review substrate addition, uptake, biomass, metabolites and byproduct evidence across process phases.

SCIENTIFIC WORKFLOW

Oxygen and heat constraints

Assess oxygen demand, off-gas and process conditions when considering mixing, transfer and scale.

SCIENTIFIC WORKFLOW

Productivity analysis

Compare titer and recovery with culture history to identify where additional experiments would be most informative.

EVIDENCE · MODELS · DECISIONS

Keep every conclusion connected.

Evidence in Bio Hub

  • Strain, substrate and inoculum history
  • Feed, oxygen, off-gas and temperature
  • Biomass, metabolites and product measurements

Models in Bio Twin

  • Growth and substrate-consumption kinetics
  • Oxygen-demand and transport assessment
  • Feed and productivity scenarios

Scientific decisions

  • Compare feeding strategies
  • Identify oxygen or substrate constraints
  • Assess robustness across scale

Process outcomes to evaluate: Biomass · titer · productivity

EXAMPLE INVESTIGATION

Is a productivity change driven by feeding, biology or an oxygen constraint?

01

Connect evidence

Align strain, seed, feed, oxygen and off-gas measurements with fermentation phases.

02

Compare context

Compare growth, substrate and product trajectories across representative runs.

03

Evaluate explanations

Assess potential oxygen-transfer and metabolic limitations with the relevant process model.

04

Review next steps

Recommend the measurements or experiments needed to distinguish the competing explanations.

Bio Agents can coordinate the scientific work across evidence and models, while Bio OS preserves governance and human review. The configured workflow determines which tasks and models are available.

Bring us this process challenge ↗

EVALUATION & SCOPE

Make the demonstration specific.

Specify the organism, substrate, product and operating range. Transport constraints, overflow metabolism and model parameters must be evaluated for the process and scale under consideration.

What evidence should we bring?

Strain, substrate and inoculum history. Feed, oxygen, off-gas and temperature. Biomass, metabolites and product measurements. Include the process question, relevant run context and the analytical methods used to assess the outcome.

How do models support the workflow?

Growth and substrate-consumption kinetics. Oxygen-demand and transport assessment. Feed and productivity scenarios. Scope and evaluation criteria are defined for your process, data and intended decision.

What should we validate before using the results?

Specify the organism, substrate, product and operating range. Transport constraints, overflow metabolism and model parameters must be evaluated for the process and scale under consideration.

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